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doc/manual: Big build system overhaul, because the use of entities and catalogs eliminates the need to have placeholders in XML which previously needed separate preprocessing. Many cleanups, including replacing almost all pattern rules (since their dependencies had to be too generous) and using defines instead. Also integrated many cleanups for the user manual text (which needs careful review, couldn't check yet if it uses any additional tags which some of our XSLT would ignore).
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